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A framework for the development of a global standardised marine taxon reference image database (SMarTaR-ID) to support image-based analyses ArchiMer
Howell, Kerry L.; Davies, Jaime S.; Allcock, A. Louise; Braga-henriques, Andreia; Buhl-mortensen, Pål; Carreiro-silva, Marina; Dominguez-carrió, Carlos; Durden, Jennifer M.; Foster, Nicola L.; Game, Chloe A.; Hitchin, Becky; Horton, Tammy; Hosking, Brett; Jones, Daniel Ob; Mah, Christopher; Laguionie Marchais, Claire; Menot, Lenaick; Morato, Telmo; Pearman, Tabitha R. R.; Piechaud, Nils; Ross, Rebecca E.; Ruhl, Henry A.; Saeedi, Hanieh; Stefanoudis, Paris V.; Taranto, Gerald H.; Thompson, Michael B.; Taylor, James R.; Tyler, Paul; Vad, Johanne; Victorero, Lissette; Vieira, Rui P.; Woodall, Lucy C.; Xavier, Joana R.; Wagner, Daniel.
Video and image data are regularly used in the field of benthic ecology to document biodiversity. However, their use is subject to a number of challenges, principally the identification of taxa within the images without associated physical specimens. The challenge of applying traditional taxonomic keys to the identification of fauna from images has led to the development of personal, group, or institution level reference image catalogues of operational taxonomic units (OTUs) or morphospecies. Lack of standardisation among these reference catalogues has led to problems with observer bias and the inability to combine datasets across studies. In addition, lack of a common reference standard is stifling efforts in the application of artificial intelligence to...
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Ano: 2019 URL: https://archimer.ifremer.fr/doc/00602/71408/69862.pdf
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Outstanding Challenges in the Transferability of Ecological Models ArchiMer
Yates, Katherine L.; Bouchet, Phil J.; Caley, M. Julian; Mengersen, Kerrie; Randin, Christophe F.; Parnell, Stephen; Fielding, Alan H.; Bamford, Andrew J.; Ban, Stephen; Marcia Barbosa, A.; Dormann, Carsten F.; Elith, Jane; Embling, Clare B.; Ervin, Gary N.; Fisher, Rebecca; Gould, Susan; Graf, Roland F.; Gregr, Edward J.; Halpin, Patrick N.; Heikkinen, Risto K.; Heinanen, Stefan; Jones, Alice R; Krishnakumar, Periyadan K.; Lauria, Valentina; Lozano-montes, Hector; Mannocci, Laura; Mellin, Camille; Mesgaran, Mohsen B.; Moreno-amat, Elena; Mormede, Sophie; Novaczek, Emilie; Oppel, Steffen; Crespo, Guillermo Ortuno; Peterson, A. Townsend; Rapacciuolo, Giovanni; Roberts, Jason J.; Ross, Rebecca E.; Scales, Kylie L.; Schoeman, David; Snelgrove, Paul; Sundblad, Goran; Thuiller, Wilfried; Torres, Leigh G.; Verbruggen, Heroen; Wang, Lifei; Wenger, Seth; Whittingham, Mark J.; Zharikov, Yuri; Zurell, Damaris; Sequeira, Ana M. M..
Predictive models are central to many scientific disciplines and vital for informing management in a rapidly changing world. However, limited understanding of the accuracy and precision of models transferred to novel conditions (their 'transferability') undermines confidence in their predictions. Here, 50 experts identified priority knowledge gaps which, if filled, will most improve model transfers. These are summarized into six technical and six fundamental challenges, which underlie the combined need to intensify research on the determinants of ecological predictability, including species traits and data quality, and develop best practices for transferring models. Of high importance is the identification of a widely applicable set of transferability...
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Ano: 2018 URL: https://archimer.ifremer.fr/doc/00466/57728/59909.pdf
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Seascape genomics reveals population isolation in the reef-building honeycomb worm, Sabellaria alveolata (L.) ArchiMer
Muir, Anna P.; Dubois, Stanislas; Ross, Rebecca E.; Firth, Louise B.; Knights, Antony M.; Lima, Fernando P.; Seabra, Rui; Corre, Erwan; Le Corguillé, Gildas; Nunes, Flavia.
ackground Under the threat of climate change populations can disperse, acclimatise or evolve in order to avoid fitness loss. In light of this, it is important to understand neutral gene flow patterns as a measure of dispersal potential, but also adaptive genetic variation as a measure of evolutionary potential. In order to assess genetic variation and how this relates to environment in the honeycomb worm (Sabellaria alveolata (L.)), a reef-building polychaete that supports high biodiversity, we carried out RAD sequencing using individuals from along its complete latitudinal range. Patterns of neutral population genetic structure were compared to larval dispersal as predicted by ocean circulation modelling, and outlier analyses and genotype-environment...
Tipo: Text Palavras-chave: RADseq; Ocean circulation modelling; Adaptation; Marine invertebrate; Larval dispersal.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00643/75538/76445.pdf
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